Title: PCAViz
Author: durrantlab
Published: <strong>1 آگسٽ 2019</strong>
Last modified: 2 آگسٽ 2019

---

پلگ انس ڳولھيو

ھي پلگ ان **WordPress جي جديد 3 وڏين رليزز** سان آزمايو نه ويو آھي. اهو ٿي سگهي 
ٿو وڌيڪ برقرار يا سپورٽ نه ٿي سگهي ۽ ٿي سگهي ٿو مطابقت جا مسئلا جڏهن ورڈپریس جي 
وڌيڪ تازي ورزن سان استعمال ڪيو وڃي.

![](https://s.w.org/plugins/geopattern-icon/pcaviz.svg)

# PCAViz

 کان: [durrantlab](https://profiles.wordpress.org/durrantlab/)

[ڊائون لوڊ ڪريو](https://downloads.wordpress.org/plugin/pcaviz.zip)

 * [تفصيل](https://snd.wordpress.org/plugins/pcaviz/#description)
 * [جائزو](https://snd.wordpress.org/plugins/pcaviz/#reviews)
 *  [تنصيب](https://snd.wordpress.org/plugins/pcaviz/#installation)
 * [ترقي](https://snd.wordpress.org/plugins/pcaviz/#developers)

 [سھائتا](https://wordpress.org/support/plugin/pcaviz/)

## وضاحت

PCAViz is a tool for displaying molecular dynamics simulations in the browser. To
encourage use, an easy-to-install PCAViz-powered WordPress plugin enables “plug-
and-play” trajectory visualization. The PCAViz download also provides examples showing
how to use PCAViz in any webpage.

### Examples of Use

The PCAViz WordPress Plugin uses shortcodes that can be inserted into any WordPress
post or page.

### Major Attributes

 1. If you use the plugin without any attributes, it will allow your site visitors 
    to select from any of the compressed JSON files you’ve uploaded to your WordPress
    media library. Note that these files must end in `.compressed.json` to be recognized.`[
    pcaviz]`
 2. If you want to show your site visitors a specific simulation present in your media
    library, simplify specify the name of the simulation. PCAViz will search through
    your media library and will choose the first JSON file ending in `.compressed.json`
    that includes your specified text in its title, URL, or file name. `[pcaviz file
    ="larp1"]`
 3. You can also control the molecular styles. The WordPress plugin uses [3DMol.js](https://3dmol.csb.pitt.edu)
    to render molecules. Passing the plugin a [3DMol.js AtomStyleSpec](https://3dmol.csb.pitt.edu/doc/types.html#AtomStyleSpec)
    JSON string changes the way the molecules are displayed. `[pcaviz visStyle='{"cartoon":{"
    style": "trace", "color": "grey", "opacity": 0.75}}']`
 4. Note that the [3DMol.js documentation](https://3dmol.csb.pitt.edu/doc/$3Dmol.GLViewer.html#setStyle)
    shows AtomStyleSpec examples as JavaScript objects. PCAViz accepts only JSON strings.
    The two look similar, but with important differences (e.g., keys in JSON strings
    must always be quoted). We recommend using a [JSON validator](https://jsonformatter.curiousconcept.com)
    to check your AtomStyleSpec strings.

### Minor Attributes

 1.  To explicitly specify the height and width of the viewer, in pixels: `[pcaviz 
     height=150 width=150]`
 2.  To align the viewer to the left, center, or right, and to optionally add a caption:`[
     pcaviz align="right" caption="My molecule in motion!"]`
 3.  To instead use the caption associated with the `.compressed.json` file in your
     media library: `[pcaviz mediaLibraryCaption="true"]`
 4.  (Note that this option is automatically set to true when no `file` attribute is
     specified.)
 5.  To hide the playback buttons: `[pcaviz playback_buttons="false"]`
 6.  To prevent the plugin from looping the animation: `[pcaviz loop="false"]`
 7.  The plugin starts playing the simulation automatically by default. To deactivate
     autoplay: `[pcaviz autoplay="false"]`
 8.  To specify the duration of the animation and how frequently the atomic positions
     are updated: `[pcaviz durationInMilliseconds=10000 updateFreqInMilliseconds=50]`
 9.  To smooth the animation by averaging the atomic coordinates over multiple frames:`[
     pcaviz windowAverageSize=25]`
 10. To control how the plugin caches calculated coordinates: `[pcaviz caching="continuous"]`
 11. Acceptable values are “none” (no caching), “continuous” (cache each frame’s coordinates
     after they are first calculated), and “pre” (calculate and cache all frame coordinates
     before starting the animation).

## انسٽاليشن

You can install the PCAViz WordPress plugin via the official WordPress Plugin Directory.
Search for **PCAViz**. The [wordpress.org](https://wordpress.org/support/article/managing-plugins/#automatic-plugin-installation)
site provides useful instructions detailing how to install plugins from their directory.

You can also install the plugin using this repository’s `pcaviz-wordpress/` directory.
Either copy `pcaviz-wordpress/` directly to your server’s `wp-content/plugins/` 
directory ([instructions](https://wordpress.org/support/article/managing-plugins/#manual-plugin-installation)),
or create a ZIP file of the `pcaviz-wordpress/` directory and upload it via your
WordPress admin screen ([instructions](https://wordpress.org/support/article/managing-plugins/#manual-upload-via-wordpress-admin)).

## FAQ

  How can I compress my MD trajectories to use with this plugin?

Download the [PCAViz Compressor](http://git.durrantlab.com/jdurrant/pcaviz) to compress
your trajectories.

## جائزا

ھن پلگ ان لاءِ ڪي به رايا ناھن.

## تعاون ڪندڙ & ڊولپرز

“PCAViz” اوپن سورس سافٽ ويئر آهي. ھيٺين ماڻھن ھن پلگ ان ۾ حصو ورتو آھي.

تعاون ڪندڙ

 *   [ durrantlab ](https://profiles.wordpress.org/durrantlab/)

[ترجمو ڪريو “PCAViz” توهان جي ٻولي ۾.](https://translate.wordpress.org/projects/wp-plugins/pcaviz)

### ڊولپمينٽ ۾ دلچسپي؟

[ڪوڊ براؤز ڪريو](https://plugins.trac.wordpress.org/browser/pcaviz/)، چيڪ ڪريو [SVN مخزن](https://plugins.svn.wordpress.org/pcaviz/)،
يا رڪنيت حاصل ڪريو [ڊولپمينٽ لاگ](https://plugins.trac.wordpress.org/log/pcaviz/)
پاران [RSS](https://plugins.trac.wordpress.org/log/pcaviz/?limit=100&mode=stop_on_copy&format=rss).

## لاگ تبدیل ڪريو

#### 1.0

 * The original version.

## ميٽا

 *  Version **1.0.0**
 *  Last updated **7 سالَ اڳ**
 *  Active installations **10+**
 *  WordPress version ** 5.2.2 يا وڌيڪ **
 *  Tested up to **5.2.26**
 *  PHP version ** 7.3.3 يا وڌيڪ **
 *  Language
 * [English (US)](https://wordpress.org/plugins/pcaviz/)
 *  [ترقي يافته ڏيک](https://snd.wordpress.org/plugins/pcaviz/advanced/)

## درجه بندي

No reviews have been submitted yet.

[Your review](https://wordpress.org/support/plugin/pcaviz/reviews/#new-post)

[See all reviews](https://wordpress.org/support/plugin/pcaviz/reviews/)

## تعاون ڪندڙ

 *   [ durrantlab ](https://profiles.wordpress.org/durrantlab/)

## سھائتا

چوڻ لاءِ ڪجهه آهي؟ مدد گهرجي؟

 [ڏسو سپورٽ فورم](https://wordpress.org/support/plugin/pcaviz/)

## عطيو

ڇا توھان ھن پلگ ان جي ترقي ۾ مدد ڪرڻ چاھيو ٿا؟

 [ هن پلگ ان ڏانھن مدد ڪريو ](http://durrantlab.com/pcaviz/)